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Research Briefs

Immune Surveillance in Clinical Regression of Preinvasive Squamous Cell Lung Cancer

Adam Pennycuick, Vitor H. Teixeira, Khalid AbdulJabbar, Shan E. Ahmed Raza, Tom Lund, Ayse U. Akarca, Rachel Rosenthal, Lukas Kalinke, Deepak P. Chandrasekharan, Christodoulos P. Pipinikas, Henry Lee-Six, Robert E. Hynds, Kate H.C. Gowers, Jake Y. Henry, Fraser R. Millar, Yeman B. Hagos, Celine Denais, Mary Falzon, David A. Moore, Sophia Antoniou, Pascal F. Durrenberger, Andrew J. Furness, Bernadette Carroll, Claire Marceaux, Marie-Liesse Asselin-Labat, William Larson, Courtney Betts, Lisa M. Coussens, Ricky M. Thakrar, Jeremy George, Charles Swanton, Christina Thirlwell, Peter J. Campbell, Teresa Marafioti, Yinyin Yuan, Sergio A. Quezada, Nicholas McGranahan and Sam M. Janes
Adam Pennycuick
1Lungs for Living Research Centre, UCL Respiratory, University College London, London, United Kingdom.
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  • ORCID record for Adam Pennycuick
Vitor H. Teixeira
1Lungs for Living Research Centre, UCL Respiratory, University College London, London, United Kingdom.
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Khalid AbdulJabbar
2Centre for Evolution and Cancer, The Institute of Cancer Research, London, United Kingdom.
3Division of Molecular Pathology, The Institute of Cancer Research, London, United Kingdom.
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  • ORCID record for Khalid AbdulJabbar
Shan E. Ahmed Raza
2Centre for Evolution and Cancer, The Institute of Cancer Research, London, United Kingdom.
3Division of Molecular Pathology, The Institute of Cancer Research, London, United Kingdom.
4Department of Computer Science, University of Warwick, Coventry, United Kingdom.
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  • ORCID record for Shan E. Ahmed Raza
Tom Lund
5Cancer Immunology Unit, University College London Cancer Institute, University College London, London, United Kingdom.
6Research Department of Haematology, University College London Cancer Institute, University College London, London, United Kingdom.
7UCL Manchester Lung Cancer Centre of Excellence, London, United Kingdom.
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Ayse U. Akarca
8Department of Cellular Pathology, University College London Hospital, London, United Kingdom.
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  • ORCID record for Ayse U. Akarca
Rachel Rosenthal
9Cancer Evolution and Genome Instability Laboratory, The Francis Crick Institute, London, United Kingdom.
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Lukas Kalinke
1Lungs for Living Research Centre, UCL Respiratory, University College London, London, United Kingdom.
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Deepak P. Chandrasekharan
1Lungs for Living Research Centre, UCL Respiratory, University College London, London, United Kingdom.
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  • ORCID record for Deepak P. Chandrasekharan
Christodoulos P. Pipinikas
10University College London Cancer Institute, London, United Kingdom.
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Henry Lee-Six
11The Wellcome Trust Sanger Institute, Hinxton, Cambridgeshire, United Kingdom.
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Robert E. Hynds
1Lungs for Living Research Centre, UCL Respiratory, University College London, London, United Kingdom.
9Cancer Evolution and Genome Instability Laboratory, The Francis Crick Institute, London, United Kingdom.
10University College London Cancer Institute, London, United Kingdom.
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Kate H.C. Gowers
1Lungs for Living Research Centre, UCL Respiratory, University College London, London, United Kingdom.
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Jake Y. Henry
3Division of Molecular Pathology, The Institute of Cancer Research, London, United Kingdom.
5Cancer Immunology Unit, University College London Cancer Institute, University College London, London, United Kingdom.
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Fraser R. Millar
12Cancer Research UK Edinburgh Centre, Institute of Genetics and Molecular Medicine, University of Edinburgh, Edinburgh, United Kingdom.
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  • ORCID record for Fraser R. Millar
Yeman B. Hagos
2Centre for Evolution and Cancer, The Institute of Cancer Research, London, United Kingdom.
3Division of Molecular Pathology, The Institute of Cancer Research, London, United Kingdom.
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Celine Denais
1Lungs for Living Research Centre, UCL Respiratory, University College London, London, United Kingdom.
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Mary Falzon
8Department of Cellular Pathology, University College London Hospital, London, United Kingdom.
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David A. Moore
7UCL Manchester Lung Cancer Centre of Excellence, London, United Kingdom.
8Department of Cellular Pathology, University College London Hospital, London, United Kingdom.
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Sophia Antoniou
1Lungs for Living Research Centre, UCL Respiratory, University College London, London, United Kingdom.
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Pascal F. Durrenberger
1Lungs for Living Research Centre, UCL Respiratory, University College London, London, United Kingdom.
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Andrew J. Furness
5Cancer Immunology Unit, University College London Cancer Institute, University College London, London, United Kingdom.
13The Royal Marsden NHS Foundation Trust, London, United Kingdom.
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Bernadette Carroll
1Lungs for Living Research Centre, UCL Respiratory, University College London, London, United Kingdom.
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Claire Marceaux
14Personalised Oncology Division, The Walter and Eliza Hall Institute of Medical Research, Melbourne, Australia.
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  • ORCID record for Claire Marceaux
Marie-Liesse Asselin-Labat
14Personalised Oncology Division, The Walter and Eliza Hall Institute of Medical Research, Melbourne, Australia.
15Knight Cancer Institute, Cancer Early Detection and Advanced Research (CEDAR) Center, Oregon Health & Science University, Portland, Oregon.
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William Larson
16Knight Cancer Institute, Department of Cell, Developmental and Cancer Biology, Oregon Health & Science University, Portland, Oregon.
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Courtney Betts
16Knight Cancer Institute, Department of Cell, Developmental and Cancer Biology, Oregon Health & Science University, Portland, Oregon.
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Lisa M. Coussens
16Knight Cancer Institute, Department of Cell, Developmental and Cancer Biology, Oregon Health & Science University, Portland, Oregon.
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Ricky M. Thakrar
1Lungs for Living Research Centre, UCL Respiratory, University College London, London, United Kingdom.
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Jeremy George
1Lungs for Living Research Centre, UCL Respiratory, University College London, London, United Kingdom.
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Charles Swanton
7UCL Manchester Lung Cancer Centre of Excellence, London, United Kingdom.
9Cancer Evolution and Genome Instability Laboratory, The Francis Crick Institute, London, United Kingdom.
10University College London Cancer Institute, London, United Kingdom.
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Christina Thirlwell
10University College London Cancer Institute, London, United Kingdom.
17University of Exeter College of Medicine and Health, Exeter, United Kingdom.
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Peter J. Campbell
11The Wellcome Trust Sanger Institute, Hinxton, Cambridgeshire, United Kingdom.
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Teresa Marafioti
8Department of Cellular Pathology, University College London Hospital, London, United Kingdom.
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Yinyin Yuan
2Centre for Evolution and Cancer, The Institute of Cancer Research, London, United Kingdom.
3Division of Molecular Pathology, The Institute of Cancer Research, London, United Kingdom.
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Sergio A. Quezada
5Cancer Immunology Unit, University College London Cancer Institute, University College London, London, United Kingdom.
6Research Department of Haematology, University College London Cancer Institute, University College London, London, United Kingdom.
7UCL Manchester Lung Cancer Centre of Excellence, London, United Kingdom.
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Nicholas McGranahan
10University College London Cancer Institute, London, United Kingdom.
18Cancer Genome Evolution Research Group, University College London Cancer Institute, London, United Kingdom.
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  • For correspondence: s.janes@ucl.ac.uk nicholas.mcgranahan.10@ucl.ac.uk
Sam M. Janes
1Lungs for Living Research Centre, UCL Respiratory, University College London, London, United Kingdom.
7UCL Manchester Lung Cancer Centre of Excellence, London, United Kingdom.
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  • For correspondence: s.janes@ucl.ac.uk nicholas.mcgranahan.10@ucl.ac.uk
DOI: 10.1158/2159-8290.CD-19-1366 Published October 2020
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Abstract

Before squamous cell lung cancer develops, precancerous lesions can be found in the airways. From longitudinal monitoring, we know that only half of such lesions become cancer, whereas a third spontaneously regress. Although recent studies have described the presence of an active immune response in high-grade lesions, the mechanisms underpinning clinical regression of precancerous lesions remain unknown. Here, we show that host immune surveillance is strongly implicated in lesion regression. Using bronchoscopic biopsies from human subjects, we find that regressive carcinoma in situ lesions harbor more infiltrating immune cells than those that progress to cancer. Moreover, molecular profiling of these lesions identifies potential immune escape mechanisms specifically in those that progress to cancer: antigen presentation is impaired by genomic and epigenetic changes, CCL27–CCR10 signaling is upregulated, and the immunomodulator TNFSF9 is downregulated. Changes appear intrinsic to the carcinoma in situ lesions, as the adjacent stroma of progressive and regressive lesions are transcriptomically similar.

Significance: Immune evasion is a hallmark of cancer. For the first time, this study identifies mechanisms by which precancerous lesions evade immune detection during the earliest stages of carcinogenesis and forms a basis for new therapeutic strategies that treat or prevent early-stage lung cancer.

See related commentary by Krysan et al., p. 1442.

This article is highlighted in the In This Issue feature, p. 1426

Footnotes

  • Note: Supplementary data for this article are available at Cancer Discovery Online (http://cancerdiscovery.aacrjournals.org/).

  • Cancer Discov 2020;10:1489–99

  • Received November 26, 2019.
  • Revision received May 27, 2020.
  • Accepted July 14, 2020.
  • Published first July 20, 2020.
  • ©2020 American Association for Cancer Research.
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Cancer Discovery: 10 (10)
October 2020
Volume 10, Issue 10
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Immune Surveillance in Clinical Regression of Preinvasive Squamous Cell Lung Cancer
Adam Pennycuick, Vitor H. Teixeira, Khalid AbdulJabbar, Shan E. Ahmed Raza, Tom Lund, Ayse U. Akarca, Rachel Rosenthal, Lukas Kalinke, Deepak P. Chandrasekharan, Christodoulos P. Pipinikas, Henry Lee-Six, Robert E. Hynds, Kate H.C. Gowers, Jake Y. Henry, Fraser R. Millar, Yeman B. Hagos, Celine Denais, Mary Falzon, David A. Moore, Sophia Antoniou, Pascal F. Durrenberger, Andrew J. Furness, Bernadette Carroll, Claire Marceaux, Marie-Liesse Asselin-Labat, William Larson, Courtney Betts, Lisa M. Coussens, Ricky M. Thakrar, Jeremy George, Charles Swanton, Christina Thirlwell, Peter J. Campbell, Teresa Marafioti, Yinyin Yuan, Sergio A. Quezada, Nicholas McGranahan and Sam M. Janes
Cancer Discov October 1 2020 (10) (10) 1489-1499; DOI: 10.1158/2159-8290.CD-19-1366

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Immune Surveillance in Clinical Regression of Preinvasive Squamous Cell Lung Cancer
Adam Pennycuick, Vitor H. Teixeira, Khalid AbdulJabbar, Shan E. Ahmed Raza, Tom Lund, Ayse U. Akarca, Rachel Rosenthal, Lukas Kalinke, Deepak P. Chandrasekharan, Christodoulos P. Pipinikas, Henry Lee-Six, Robert E. Hynds, Kate H.C. Gowers, Jake Y. Henry, Fraser R. Millar, Yeman B. Hagos, Celine Denais, Mary Falzon, David A. Moore, Sophia Antoniou, Pascal F. Durrenberger, Andrew J. Furness, Bernadette Carroll, Claire Marceaux, Marie-Liesse Asselin-Labat, William Larson, Courtney Betts, Lisa M. Coussens, Ricky M. Thakrar, Jeremy George, Charles Swanton, Christina Thirlwell, Peter J. Campbell, Teresa Marafioti, Yinyin Yuan, Sergio A. Quezada, Nicholas McGranahan and Sam M. Janes
Cancer Discov October 1 2020 (10) (10) 1489-1499; DOI: 10.1158/2159-8290.CD-19-1366
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