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Cancer Discovery
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Research Article

Surface proteomics reveals CD72 as a target for in vitro-evolved nanobody-based CAR-T cells in KMT2A/MLL1-rearranged B-ALL

Matthew A Nix, Kamal Mandal, Huimin Geng, Neha Paranjape, Yu-Hsiu T. Lin, Jose Rivera, Makeba Marcoulis, Kristie L White, Jeffrey D Whitman, Sagar P Bapat, Kevin R Parker, Jonathan Ramirez, Anne Deucher, Paul Phojanokong, Veronica Steri, Faranak Fattahi, Byron Hann, Ansuman T Satpathy, Aashish Manglik, Elliot Stieglitz and Arun P. Wiita
Matthew A Nix
1Laboratory Medicine, University of California, San Francisco
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Kamal Mandal
1Laboratory Medicine, University of California, San Francisco
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Huimin Geng
1Laboratory Medicine, University of California, San Francisco
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Neha Paranjape
1Laboratory Medicine, University of California, San Francisco
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Yu-Hsiu T. Lin
1Laboratory Medicine, University of California, San Francisco
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Jose Rivera
2Pediatrics, University of California, San Francisco
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Makeba Marcoulis
1Laboratory Medicine, University of California, San Francisco
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Kristie L White
1Laboratory Medicine, University of California, San Francisco
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Jeffrey D Whitman
1Laboratory Medicine, University of California, San Francisco
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Sagar P Bapat
1Laboratory Medicine, University of California, San Francisco
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Kevin R Parker
3Department of Pathology, Stanford University
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Jonathan Ramirez
4Cardiovascular Research Institute, University of California, San Francisco
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Anne Deucher
1Laboratory Medicine, University of California, San Francisco
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Paul Phojanokong
5Helen Diller Family Comprehensive Cancer Center, University of California, San Francisco
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Veronica Steri
6HDFCCC, University of California, San Francisco
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Faranak Fattahi
4Cardiovascular Research Institute, University of California, San Francisco
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Byron Hann
5Helen Diller Family Comprehensive Cancer Center, University of California, San Francisco
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Ansuman T Satpathy
7Pathology, Stanford University
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Aashish Manglik
8Pharmaceutical Chemistry, Anesthesia, University of California, San Francisco
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Elliot Stieglitz
9Department of Pediatrics, Benioff Children's Hospital, University of California, San Francisco
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Arun P. Wiita
10Department of Laboratory Medicine, University of California, San Francisco
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  • For correspondence: Arun.Wiita@ucsf.edu
DOI: 10.1158/2159-8290.CD-20-0242
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Abstract

Alternate strategies are needed for B-cell malignancy patients relapsing after CD19-targeted immunotherapy. Here, cell surface proteomics revealed CD72 as an optimal target for poor-prognosis KMT2A/MLL1-rearranged (MLLr) B-ALL, which we further found to be expressed in other B-cell malignancies. Using a recently-described, fully-in vitro system we selected synthetic CD72-specific nanobodies, incorporated them into CARs, and demonstrated robust activity against B-cell malignancy models, including CD19 loss. Taking advantage of CD72's role in inhibiting B-cell receptor signaling, we found that pharmacologic SHIP1 inhibition increased CD72 surface density. We establish CD72-nanobody CAR T's as a promising therapy for MLLr B-ALL.

  • Received February 29, 2020.
  • Revision received February 9, 2021.
  • Accepted March 12, 2021.
  • Copyright ©2021, American Association for Cancer Research.
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This OnlineFirst version was published on March 16, 2021
doi: 10.1158/2159-8290.CD-20-0242

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Surface proteomics reveals CD72 as a target for in vitro-evolved nanobody-based CAR-T cells in KMT2A/MLL1-rearranged B-ALL
Matthew A Nix, Kamal Mandal, Huimin Geng, Neha Paranjape, Yu-Hsiu T. Lin, Jose Rivera, Makeba Marcoulis, Kristie L White, Jeffrey D Whitman, Sagar P Bapat, Kevin R Parker, Jonathan Ramirez, Anne Deucher, Paul Phojanokong, Veronica Steri, Faranak Fattahi, Byron Hann, Ansuman T Satpathy, Aashish Manglik, Elliot Stieglitz and Arun P. Wiita
Cancer Discov March 16 2021 DOI: 10.1158/2159-8290.CD-20-0242

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Surface proteomics reveals CD72 as a target for in vitro-evolved nanobody-based CAR-T cells in KMT2A/MLL1-rearranged B-ALL
Matthew A Nix, Kamal Mandal, Huimin Geng, Neha Paranjape, Yu-Hsiu T. Lin, Jose Rivera, Makeba Marcoulis, Kristie L White, Jeffrey D Whitman, Sagar P Bapat, Kevin R Parker, Jonathan Ramirez, Anne Deucher, Paul Phojanokong, Veronica Steri, Faranak Fattahi, Byron Hann, Ansuman T Satpathy, Aashish Manglik, Elliot Stieglitz and Arun P. Wiita
Cancer Discov March 16 2021 DOI: 10.1158/2159-8290.CD-20-0242
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